Ph.D. in Ingegneria Informatica E Dei Sistemi , 29th cycle (2014-2016)
Ph.D. obtained in 2017
Dissertation:
Bioinformatics methods and tools for identifying disease-associated B-cell populations, miRNA patterns and gene fusions in RNA-Seq data
Tutors:
Enrico MaciiTeaching
Teachings
Master of Science
- Bioinformatics. A.A. 2013/14, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
- Bioinformatics. A.A. 2014/15, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
- Bioinformatics. A.A. 2015/16, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
- Bioinformatics. A.A. 2016/17, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
Bachelor of Science
- Informatica. A.A. 2015/16, INGEGNERIA AEROSPAZIALE. Collaboratore del corso
- Informatica. A.A. 2016/17, INGEGNERIA AEROSPAZIALE. Collaboratore del corso
Publications
Works published during the Ph.D. View all publications in Porto@Iris
- Urgese, Gianvito; Paciello, Giulia; Macii, Enrico; Acquaviva, Andrea; Ficarra, Elisa (2017)
isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets. In: Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017, Prague, 21-25 July 2017
Contributo in Atti di Convegno (Proceeding) - Paciello, Giulia; Ficarra, Elisa (2017)
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. In: BMC BIOINFORMATICS, vol. 18, pp. 1-12. ISSN 1471-2105
Contributo su Rivista - Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa (2016)
isomiR-SEA: An RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. In: BMC BIOINFORMATICS, vol. 17. ISSN 1471-2105
Contributo su Rivista - Paciello, Giulia; Acquaviva, Andrea; Chiara, Pighi; Alberto, Ferrarini; Macii, Enrico; ... (2015)
VDJSeq-Solver: In Silico V(D)J Recombination Detection tool. In: PLOS ONE, vol. 10, pp. 1-26. ISSN 1932-6203
Contributo su Rivista - Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea (2015)
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools. In: RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition, Oxford (UK), 24-26 March 2015
Contributo in Atti di Convegno (Proceeding) - Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Graziano, ... (2014)
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014, pp. 1347-1358. ISBN: 9788415814849
Contributo in Atti di Convegno (Proceeding) - Urgese, Gianvito; Paciello, Giulia; Isella, C.; Medico, E.; Macii, Enrico; Ficarra, ... (2014)
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014, pp. 1015-1026. ISBN: 9788415814849
Contributo in Atti di Convegno (Proceeding)