Corso di laurea magistrale

• Bioinformatics. A.A. 2013/14, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
• Bioinformatics. A.A. 2015/16, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
• Bioinformatics. A.A. 2014/15, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso
• Bioinformatics. A.A. 2016/17, INGEGNERIA INFORMATICA (COMPUTER ENGINEERING). Collaboratore del corso

Corso di laurea di 1° livello

• Informatica. A.A. 2015/16, INGEGNERIA AEROSPAZIALE. Collaboratore del corso
• Informatica. A.A. 2016/17, INGEGNERIA AEROSPAZIALE. Collaboratore del corso

• Paciello, Giulia; Ficarra, Elisa (2017)
  FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. In: BMC BIOINFORMATICS, vol. 18, pp. 1-12. ISSN 1471-2105
  Contributo su Rivista
• Paciello, Giulia (2017)
  Bioinformatics methods and tools for identifying disease-associated B-cell populations, miRNA patterns and gene fusions in RNA-Seq data. relatore: Ficarra E., Macii E., 29. XXIX Ciclo, P.: 141
  Doctoral Thesis
• Urgese, Gianvito; Paciello, Giulia; Macii, Enrico; Acquaviva, Andrea; Ficarra, Elisa (2017)
  isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets. In: Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017, Prague, 21-25 July 2017
  Contributo in Atti di Convegno (Proceeding)
• Jacobs, J.; Christiaens, ; V, .; Potier, ; D, .; Svetlichnyy, ; D, .; Romanelli, ; L, .; ... (2016)
  Directly linking non-coding SNPs to changes in epithelial enhancer activity. In: EMBL Transcription and Chromatin, Edition 12, Heidelberg, 27-30 Aug 2016
  Contributo in Atti di Convegno (Proceeding)
• A., Padella; G., Simonetti; Paciello, Giulia; A., Ferrari; E., Zago; C., Baldazzi; V., ... (2016)
  A COMBINED APPROACH TO DETECT RARE FUSION EVENTS IN ACUTE MYELOID LEUKEMIA. In: 21st Congress Of The European Hematology Association, Copenhagen, Denmark, June 9–12, 2016, pp. 666-667. ISSN 0390-6078
  Contributo in Atti di Convegno (Proceeding)
• Antonella, Padella; Giorgia, Simonetti; Anna, Ferrari; Paciello, Giulia; Elisa, Zago; ... (2016)
  Novel fusion transcripts identified by RNAseq cooperate with somatic mutations in the pathogenesis of acute myeloid leukemia. In: CANCER RESEARCH, vol. 76, pp. 113-113. ISSN 1538-7445
  Contributo su Rivista
• Paciello, Giulia; Pighi, C.; Ficarra, Elisa; Zamo', A. (2016)
  Detection of rearranged light chain sequences by RNA-Seq in B-cell lymphomas and reactive lymphadenopathies. In: EAHP 2016: 18th Meeting of the European Association for Hemathopathology, Basilea, 3-8 Sept. 2016
  Contributo in Atti di Convegno (Proceeding)
• Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa (2016)
  isomiR-SEA: An RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. In: BMC BIOINFORMATICS, vol. 17. ISSN 1471-2105
  Contributo su Rivista
• Simona, Soverini; Caterina De, Benedittis; Michela, Rondoni; Cristina, Papayannidis; ... (2016)
  The Genomic and Transcriptomic Landscape of Systemic Mastocytosis. In: BLOOD, vol. 128. ISSN 0006-4971
  Contributo su Rivista
• Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea (2015)
  On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools. In: RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition, Oxford (UK), 24-26 March 2015
  Contributo in Atti di Convegno (Proceeding)
• Padella, A.; Simonetti, G.; Paciello, Giulia; Ferrari, A.; Zago, E.; Baldazzi, C.; ... (2015)
  RNA Sequencing Reveals Novel and Rare Fusion Transcripts in Acute Myeloid Leukemia. In: BLOOD, vol. 126, pp. 3627-3627. ISSN 0006-4971
  Contributo su Rivista
• Paciello, Giulia; Acquaviva, Andrea; Chiara, Pighi; Alberto, Ferrarini; Macii, Enrico; ... (2015)
  VDJSeq-Solver: In Silico V(D)J Recombination Detection tool. In: PLOS ONE, vol. 10, pp. 1-26. ISSN 1932-6203
  Contributo su Rivista
• Urgese, Gianvito; Paciello, Giulia; Isella, C.; Medico, E.; Macii, Enrico; Ficarra, ... (2014)
  miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014, pp. 1015-1026. ISBN: 9788415814849
  Contributo in Atti di Convegno (Proceeding)
• Antonella, Padella; Giorgia, Simonetti; Viviana, Guadagnuolo; Emanuela, Ottaviani; Anna, ... (2014)
  Next-Generation Sequencing Analysis Revealed That BCL11B Chromosomal Translocation Cooperates with Point Mutations in the Pathogenesis of Acute Myeloid Leukemia. In: BLOOD, vol. 124. ISSN 0006-4971
  Contributo su Rivista
• Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa; Graziano, ... (2014)
  Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014, pp. 1347-1358. ISBN: 9788415814849
  Contributo in Atti di Convegno (Proceeding)
• Paciello, Giulia; Acquaviva, Andrea; Consalvo, Petti; Claudio, Isella; Enzo, Medico; ... (2014)
  A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer. In: BIOSTEC 2014, Eseo, Angers, Loire Valley, France, 3-6 March 2014, pp. 142-148
  Contributo in Atti di Convegno (Proceeding)